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Please read the following refererence for more details on exploBATCH
Sci Rep. 2017 Sep 7;7(1):10849. doi: 10.1038/s41598-017-11110-6. A Novel Statistical Method to Diagnose, Quantify and Correct Batch Effects in Genomic Studies.
The comBat method is decribed in SVA package. Here we used the parameter option
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Data table pre-process
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Suggestions and bug report
This shiny apps uses:
DT, data.table: to table manipulation and display
shinyBS: for progressing status.
plotly: to make ggplot2 plot more interactive
ggplot2: for a lot of plotting
Of course, shiny, rstudio, htmlwidgets, and many more
V0.11: 20180207, a few bug fix and more preprocess options added
V0.1: 20180206, app online